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Pull requests: ratschlab/metagraph

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Pull requests list

Server queries in multi-graph regime with full loading to RAM
#569 opened Nov 21, 2025 by karasikov Loading…
Added support for indexing sequence IDs as counts
#560 opened Nov 4, 2025 by karasikov Loading…
Parallel Multi-BRWT query with one traversal
#559 opened Nov 3, 2025 by karasikov Loading…
5
Support a coordinate-to-accession map to a graph, mapping an annotation label+coordinate to an accession
#549 opened Oct 8, 2025 by hmusta Loading…
13
Batch aggregation (two-level batching)
#522 opened May 16, 2025 by karasikov Loading…
5
use sparse bit vectors for rainbow matrices
#518 opened May 12, 2025 by hmusta Loading…
Port row_diff_traverse from DBGSuccinct
#512 opened Mar 13, 2025 by hmusta Loading…
Option to annotate a representative node from each monochromatic contig
#500 opened Oct 2, 2024 by hmusta Loading…
1
Count-based differential assembly
#487 opened Jun 11, 2024 by hmusta Loading…
Less stringent alignment and seed filtering
#453 opened Jun 5, 2023 by hmusta • Draft
5 tasks done
2
Support outputting alignments in GAF format
#384 opened Feb 7, 2022 by hmusta • Draft
4
implement the taxonomic classification with queries on the annotation matrix
#347 opened Aug 2, 2021 by heracle Loading…
11
support for multiple successors at forks
#329 opened Jun 16, 2021 by karasikov Loading…
8
mark rd successors only in forks
#308 opened Apr 2, 2021 by karasikov Loading…
Alignment and query cleanups
#271 opened Jan 19, 2021 by karasikov • Draft
Lower RAM implementation of slice_columns for BRWT
#226 opened Oct 26, 2020 by hmusta • Draft
10
Add checkpointing to metagraph build
#197 opened Sep 8, 2020 by danieldanciu • Draft
46
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