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@rki-mf1

RKI MF1 Bioinformatics

Bioinformatics code of MF1

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  1. clean clean Public

    A nextflow pipeline for decontamination of short reads, long reads and contigs

    Nextflow 55 5

  2. ont-methylation ont-methylation Public

    Nextflow 15

  3. breakfast breakfast Public

    breakfast is a simple and fast tool for clustering SARS-CoV-2 genomes using precalculated sequence features (e.g. nucleotide substitutions).

    Python 11 1

  4. omnifluss omnifluss Public

    Computational workflow for virus genome reconstruction

    Nextflow 9

  5. viruswarn-sc2 viruswarn-sc2 Public

    VirusWarn-SC2 is a simple Variants of concern aLert system script for SARS-CoV-2.

    HTML 7 1

  6. covsonar covsonar Public

    A database-driven system for handling genomic sequences of SARS-CoV-2 and screening genomic profiles.

    Python 7

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