[ENH] Update AppScript, move to new JB build system

actions/publish.yml

@@ -1,51 +1,76 @@
-name: Publish to neurolibre.com
+name: deploy-book
+
 on:
  push:
+  branches:
+    - master
+  # If your git repository has the Jupyter Book within some-subfolder next to
+  # unrelated files, you can make this run only if a file within that specific
+  # folder has been modified.
+  #
+  # paths:
+  # - content/**
   tags:
-   - "pub-v*"
+   - "v*"
 env:
  PUB_NAME: ${{ github.event.repository.name }}
 
 jobs:
-  dispatch2Website:
+
+  deploy-book:
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v2
+
+    # Install dependencies
+    - name: Set up Python 3.7
+      uses: actions/setup-python@v1
+      with:
+        python-version: 3.7
+
+    - name: Install dependencies
+      run: |
+        pip install -r build-requirements.txt
+
+    # Build the page
+    - name: Build the book
+      run: |
+        jupyter-book build content/
+
+    # Push the book's HTML to github-pages
+    - name: GitHub Pages action
+      uses: peaceiris/actions-gh-pages@v3.6.1
+      with:
+        github_token: ${{ secrets.GITHUB_TOKEN }}
+        publish_dir: ./content/_build/html
+        commit_message: 🤖 Deploy Jupyter Book
+
+  publish:
+
+    name: Publish to website
+    needs: [deploy-book]
+    if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags')
     runs-on: ubuntu-latest
     steps:
      - name: Checkout publication repository
        uses: actions/checkout@v2
-     - name: Convert yaml to json (publication info) 
+
+    - name: Convert yaml to json (publication info)
        uses: fabasoad/yaml-json-xml-converter-action@v1.0.0
        id: yaml2json
        with:
          path: '${{ env.PUB_NAME }}.yml'
          from: 'yaml'
          to: 'json'
+
      - name: Resolve release tag
        run: |
         echo ::set-env name=PUB_TAG::$(echo ${GITHUB_REF/refs\/tags\//})
-     - name: Dispatch event to neurolibre.com   
+
+     - name: Dispatch event to neurolibre.com
        uses: peter-evans/repository-dispatch@v1
        with:
           token: ${{ secrets.PAT }}
           event-type: publish
           repository: roboneurotest/website-test
-          client-payload: '{"pub_info": ${{ steps.yaml2json.outputs.data }}, "pub_name": "${{ env.PUB_NAME }}", "pub_tag": "${{ env.PUB_TAG }}"}'
-  buildJupyterBook:
-    runs-on: ubuntu-latest
-    steps:  
-    - name: Chekout repo
-      uses: actions/checkout@v2
-    - name: Build site HTML
-      run: |
-         docker pull agahkarakuzu/jbuild
-         mkdir _site
-         chmod 777 -R ./_site
-         docker run --rm --security-opt label:disable \
-         -v ${{ github.workspace }}:/srv/jekyll \
-         agahkarakuzu/jbuild  
-         rsync -a $GITHUB_WORKSPACE/_site/ $GITHUB_WORKSPACE/
-    - name: Deploy
-      uses: peaceiris/actions-gh-pages@v3
-      with:
-        github_token: ${{ secrets.PAT }}
-        publish_dir: ./
-        commit_message: 🤖 Deploy Jupyter Book          
+          client-payload: '{"pub_info": ${{ steps.yaml2json.outputs.data }}, "pub_name": "${{ env.PUB_NAME }}", "pub_tag": "${{ env.PUB_TAG }}"}'

build-requirements.txt

@@ -0,0 +1,3 @@
+-r requirements.txt
+jupyter-book
+jupytext[myst]

editorial/allowed_list.json

@@ -0,0 +1,7 @@
+{
+    "allowed": [
+        "mathieuboudreau",
+        "TommyBoshkovski",
+        "emdupre"
+    ]
+}

editorial/neurolibre_roles.json

@@ -1,13 +1,13 @@
 {
 "welcome_team": ["mathieuboudreau",
-                "agahkarakuzu",
-                "ltetrel",
-                "pbellec"
+                 "agahkarakuzu",
+                 "ltetrel",
+                 "pbellec"
                 ],
 "reviewers":    [{"handle":"agahkarakuzu","expertise":["qmri","software"],"affiliation":"NeuroPoly Lab, Polytechnique Montreal"},
                  {"handle":"mathieuboudreau","expertise":["qmri","software"],"affiliation":"Montreal Heart Institute"},
                  {"handle":"emdupre","expertise":["fmri","software"],"affiliation":"Montreal Neurological Institute, McGill"},
                  {"handle":"ltetrel","expertise":["software"],"affiliation":"SIMEXP Lab, University of Montreal"},
-                 {"handle":"pbellec","expertise":["software","neuroimaging"],"affiliation":"SIMEXP Lab, University of Montreal"}               
-                ]                
+                 {"handle":"pbellec","expertise":["software","neuroimaging"],"affiliation":"SIMEXP Lab, University of Montreal"}
+                ]
 }

file-types.json

@@ -0,0 +1,77 @@
+{
+  "Jupyter Notebook": {
+    "format": ".ipynb",
+    "icon": "https://images-wixmp-ed30a86b8c4ca887773594c2.wixmp.com/i/de920fda-40bd-43e8-9ed3-339bb970c3c4/dd8pdzs-cbc64bcd-86d9-4e22-a415-820e63c4e959.png",
+    "icon_size": 30,
+    "plural": "s",
+    "abs_match": false
+  },
+  "Dockerfile": {
+    "format": "Dockerfile",
+    "icon": "https://cdn4.iconfinder.com/data/icons/logos-and-brands/512/97_Docker_logo_logos-512.png",
+    "icon_size": 30,
+    "plural": "s",
+    "abs_match": false
+  },
+  "JupyterBook config file": {
+    "format": [
+        "_config.yml",
+        "toc.yml",
+        "_data/toc.yml"
+    ],
+    "icon": "https://jupyterbook.org/_static/logo.png",
+    "icon_size": 30,
+    "plural": "s",
+    "abs_match": true
+  },
+  "Pip Requirements": {
+    "format": "requirements.txt",
+    "icon": "https://cdn4.iconfinder.com/data/icons/logos-and-brands/512/267_Python_logo-512.png",
+    "icon_size": 30,
+    "plural": "",
+    "abs_match": true
+  },
+  "Other config file": {
+    "format": [
+        "environment.yml",
+        "Pipfile",
+        "Pipfile.lock",
+        "setup.py",
+        "Project.toml",
+        "REQUIRE",
+        "install.R",
+        "apt.txt",
+        "DESCRIPTION",
+        "manifest.yml",
+        "postBuild",
+        "start",
+        "runtime.txt",
+        "default.nix"
+    ],
+    "icon": "https://avatars3.githubusercontent.com/u/13699731?s=280&v=4",
+    "icon_size": 30,
+    "plural": "s",
+    "abs_match": true
+  },
+  "Readme": {
+    "format": "README.md",
+    "icon": "https://cdn4.iconfinder.com/data/icons/logos-and-brands/512/273_Readme_logo-512.png",
+    "icon_size": 30,
+    "plural": "",
+    "abs_match": true
+  },
+  "License": {
+    "format": "LICENSE",
+    "icon": "https://cdn0.iconfinder.com/data/icons/customicondesign-office7-shadow-png/256/License-manager.png",
+    "icon_size": 30,
+    "plural": "",
+    "abs_match": true
+  },
+  "Repo2Data": {
+    "format": "data_requirement.json",
+    "icon": "https://cdn4.iconfinder.com/data/icons/cloud-computing-2/500/cloud-arrow-down-512.png",
+    "icon_size": 30,
+    "plural": "",
+    "abs_match": true
+  }
+}

integration/google/OAuth.json

@@ -6,9 +6,9 @@
   "runtimeVersion": "V8",
   "oauthScopes": [
     "https://www.googleapis.com/auth/gmail.send",
-     "https://www.googleapis.com/auth/gmail.compose",
+    "https://www.googleapis.com/auth/gmail.compose",
     "https://www.googleapis.com/auth/gmail.modify",
     "https://www.googleapis.com/auth/gmail.addons.current.action.compose",
     "https://www.googleapis.com/auth/script.external_request"
-  ]  
+  ]
 }