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@scipion-em

scipion-em

Official repository for Scipion plugins

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  1. scipion-pyworkflow scipion-pyworkflow Public

    Underlying pyworkflow module for the Scipion framework

    Python 5 8

  2. scipion-em scipion-em Public

    Base Scipion plugin defining objects and protocols for EM

    Python 9 7

  3. scipion-app scipion-app Public

    Base Scipion application that is based on pyworkflow and all extension plugins

    Python 7 3

  4. scipion-installer scipion-installer Public

    Scipion app installer for version 3. Compatible with python2 and python3. It creates virtualenv or conda environments.

    Python 3 3

  5. docs docs Public

    Scipion documentation repository

    Python 1 6

  6. scipion-em-tomo scipion-em-tomo Public

    Base tomography Scipion plugin with data model definition

    Python 9 5

Repositories

Showing 10 of 119 repositories
  • scipion-em-tomosegmemtv Public

    Scipion plugin for segmentation and annotation of membranes (with tomoSegmenTV and membSegAnnotator)

    scipion-em/scipion-em-tomosegmemtv’s past year of commit activity
    Python 4 GPL-3.0 0 2 0 Updated Jan 9, 2026
  • scipion-em-novactf Public

    Plugin to use NovaCTF in scipion

    scipion-em/scipion-em-novactf’s past year of commit activity
    Python 1 GPL-3.0 0 1 1 Updated Jan 9, 2026
  • scipion-em-gapstop Public

    Plugin to use Gapstop_TM in Scipion

    scipion-em/scipion-em-gapstop’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Jan 9, 2026
  • scipion-em-dynamo Public

    Dynamo tomography plugin for Scipion

    scipion-em/scipion-em-dynamo’s past year of commit activity
    Python 1 GPL-3.0 0 5 0 Updated Jan 9, 2026
  • scipion-em-deepfinder Public

    Scipion plugin for deepfinder (tomography picker)

    scipion-em/scipion-em-deepfinder’s past year of commit activity
    Python 3 GPL-3.0 0 2 0 Updated Jan 9, 2026
  • scipion-em-cryocare Public

    Plugin to integrate cryoCARE: denoiser for tomography

    scipion-em/scipion-em-cryocare’s past year of commit activity
    Python 3 GPL-3.0 0 0 1 Updated Jan 9, 2026
  • scipion-em-motioncorr Public

    Plugin to use Motioncor2 program within the Scipion framework

    scipion-em/scipion-em-motioncorr’s past year of commit activity
    Python 1 GPL-3.0 0 4 1 Updated Jan 9, 2026
  • scipion-em-tomo3d Public

    Plugin for the software of Jose Jesus Fernandez

    scipion-em/scipion-em-tomo3d’s past year of commit activity
    Python 0 GPL-3.0 0 2 0 Updated Jan 9, 2026
  • scipion-em-sphire Public

    Plugin to use Sphire programs within the Scipion framework

    scipion-em/scipion-em-sphire’s past year of commit activity
    Python 0 GPL-3.0 1 2 1 Updated Jan 9, 2026
  • scipion-em-reliontomo Public

    Plugin to use Relion tomography programs within the Scipion framework

    scipion-em/scipion-em-reliontomo’s past year of commit activity
    Python 2 GPL-3.0 3 5 1 Updated Jan 9, 2026

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