Skip to content

Conversation

@mffrank
Copy link

@mffrank mffrank commented Feb 10, 2026

Name of the tool: grassp

Short description:

grassp (GRaph-based Analysis of Subcellular/Spatial Proteomics) is a Python module for fast, flexible, and scalable analysis of mass-spectrometry-based subcellular proteomics datasets.

How does the package use scverse data structures (please describe in a few sentences):

It uses the anndata format to store mass-spec data and results. scanpy is used for dimensionality reduction and visualization functions.

  • The code is publicly available under an OSI-approved license
  • The package provides versioned releases
  • The package can be installed from a standard registry (e.g. PyPI, conda-forge, bioconda)
  • Automated tests cover essential functions of the package and a reasonable range of inputs and conditions [^1]
  • Continuous integration (CI) automatically executes these tests on each push or pull request [^2]
  • The package provides API documentation via a website or README[^3]
  • The package uses scverse datastructures where appropriate (i.e. AnnData, MuData or SpatialData and their modality-specific extensions)
  • I am an author or maintainer of the tool and agree on listing the package on the scverse website

Recommended

  • Please announce this package on scverse communication channels (zulip, discourse, twitter)

  • Please tag the author(s) these announcements. Handles (e.g. @scverse_team) to include are:

    • Zulip:
    • Discourse:
    • Mastodon:
    • Bluesky:
    • Twitter:
  • The package provides tutorials (or "vignettes") that help getting users started quickly

  • The package uses the scverse cookiecutter template.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant