1.4.1

What's Changed

• R: updated R tutorials by @ori-kron-wis in #487
• updated destvi tutorial by @ori-kron-wis in #495
• Add get_normalized_accesssibility in multivi tutorial + destvi tutorial updates + mrvi tutorial fixes by @ori-kron-wis in #496

Full Changelog: 1.4.0...1.4.1

1.4.0.post1

Merge pull request #483 from scverse/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1.4.0

What's Changed

• Integration of CytoVI tutorials by @florianingelfinger in #467
• mention that resolVI can be used as first embedding model by @LevyNat in #471
• Add scarches functionality to sysVI tutorial by @Hrovatin in #468
• MRVI in torch tutorials + applied on Tahoe100 by @ori-kron-wis in #469
• change the tests to be on py3.13 by default by @ori-kron-wis in #475
• Fix in autotune_scvi.ipynb by @ori-kron-wis in #476
• automated update for use_cases/autotune_scvi.ipynb by @github-actions[bot] in #478

New Contributors

• @florianingelfinger made their first contribution in #467

Full Changelog: 1.3.3...v1.4.0

1.3.3

What's Changed

• fix bad tutorials file names by @ori-kron-wis in #456
• docs: New AnnCollection Tutorial by @ori-kron-wis in #450

Full Changelog: 1.3.2...1.3.3

1.3.2

What's Changed

• Tutorials New Location Because of New RTD tutorials Filtering Scheme by @ori-kron-wis in #436
• updates by @ori-kron-wis in #439
• NicheVI tuto by @LevyNat in #423
• automated update for atac/PeakVI.ipynb by @github-actions in #447
• automated update for multimodal/totalVI.ipynb by @github-actions in #448
• Taho100M cells Hub tutorial by @ori-kron-wis in #453
• automated update for scrna/harmonization.ipynb by @github-actions in #449
• automated update for spatial/DestVI_tutorial.ipynb by @github-actions in #451
• automated update for multimodal/MultiVI_tutorial.ipynb by @github-actions in #441
• add preprocessing tutorial with multiple examples by @lordy5 in #398

New Contributors

• @LevyNat made their first contribution in #423
• @lordy5 made their first contribution in #398

Full Changelog: 1.3.1...1.3.2

1.3.1.post1

Merge pull request #454 from scverse/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1.3.1

What's Changed

• added custom dataloaders initial tutos by @ori-kron-wis in #425

Full Changelog: 1.3.0...1.3.1

1.3.0

What's Changed

• docs: Fix DE broken link by @ori-kron-wis in #387
• totalvi update with explenations about pre filtering procedures by @ori-kron-wis in #390
• ResolVI tutorial. by @canergen in #392
• api_overview: latent_subset fix by @ryan-williams in #391
• updated with ext tutorial by @ori-kron-wis in #394
• Basic Decipher Tutorial by @justjhong in #373
• SysVI tutorial by @Hrovatin in #212
• update tutorials by @ori-kron-wis in #404
• update tutorials by @ori-kron-wis in #407
• update tutorials by @ori-kron-wis in #409
• docs: change structure of tutorials by @ori-kron-wis in #413
• docs: scib-autotune addition to tune tutorial by @ori-kron-wis in #412
• add tutorial for interpretability by @ori-kron-wis in #414
• added scverse symbol by @ori-kron-wis in #416
• Update interpretability.ipynb by @ori-kron-wis in #418
• updated tuto with fast shap by @ori-kron-wis in #420

New Contributors

• @ryan-williams made their first contribution in #391
• @Hrovatin made their first contribution in #212

Full Changelog: 1.2.2...1.3.0

1.2.2

What's Changed

• docs: updated tutorials without pymde + HF bug by @ori-kron-wis in #378
• test: Added localy manual macos tests for mps by @ori-kron-wis in #380
• Update run_notebook_macos.yaml by @ori-kron-wis in #381
• Update run_notebook_macos.yaml by @ori-kron-wis in #382
• Update run_notebook_macos.yaml by @ori-kron-wis in #384

Full Changelog: 1.2.1...1.2.2

1.2.1

What's Changed

• automated update for scrna/cellassign_tutorial.ipynb by @github-actions in #360
• fix in tangram - anndata uniq vars by @ori-kron-wis in #361
• automated update for multimodal/totalVI.ipynb by @github-actions in #333
• docs: bad link in minification.ipynb by @ori-kron-wis in #369
• docs: Remove autotune hyperparameters info from tutorial by @ori-kron-wis in #371
• MethylVI batch effect tutorial by @ethanweinberger in #363
• ci: Added run links for Methylvi by @ori-kron-wis in #374
• automated update for scbs/MethylVI_batch.ipynb by @github-actions in #376
• automated update for scrna/MrVI_tutorial.ipynb by @github-actions in #375

Full Changelog: 1.2.0...1.2.1