252 devops finalize phase 1

.github/workflows/build_wheels.yml

@@ -44,8 +44,8 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ["3.9", "3.10", "3.11", "3.12"]
+        os: [ubuntu-latest, windows-latest, macos-13, macos-14]
+        python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
 
     steps:
       - name: Checkout code
@@ -58,7 +58,7 @@ jobs:
         if: runner.os == 'Windows'
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.17.0
+        uses: pypa/cibuildwheel@v2.23.3
         env:
           # Build with C++ support
           CIBW_ENVIRONMENT: ENABLE_CPP=ON

.github/workflows/test.yml

@@ -19,8 +19,16 @@ jobs:
     runs-on: ${{ matrix.os }}
     strategy:
       matrix:
-        os: [ubuntu-latest, windows-latest, macos-latest]
-        python-version: ["3.9", "3.12"]
+        os:
+          [
+            ubuntu-latest,
+            windows-latest,
+            macos-latest,
+            ubuntu-22.04,
+            macos-13,
+            macos-14,
+          ]
+        python-version: ["3.9", "3.13"]
     steps:
       - uses: actions/checkout@v4
 

README.md

@@ -1,6 +1,6 @@
 ![FastDDM](docs/source/fastddm-logo-horizontal.svg)
 
-![Python](https://img.shields.io/badge/python-3.9%20|%203.12-blue)
+![Python](https://img.shields.io/badge/python-3.9%20%7C%203.13-blue)
 [![GitHub Actions](https://github.com/somexlab/fastddm/actions/workflows/test.yml/badge.svg?branch=main)](https://github.com/somexlab/fastddm/actions/workflows/test.yml)
 [![PyPI Version](https://badge.fury.io/py/fastddm.svg)](https://pypi.org/project/fastddm/)
 [![Read the Docs](https://readthedocs.org/projects/fastddm/badge/?version=latest)](https://fastddm.readthedocs.io/en/latest/?badge=latest)
@@ -10,25 +10,27 @@
 The features implemented are targeted at the experimental soft matter research community dealing with inert and active/biological samples.
 
 ## Resources
+
 - [Documentation](https://fastddm.readthedocs.io/):
   Python API description, installation, examples, and usage information.
 - [Example notebooks](https://github.com/somexlab/fastddm-tutorials):
   Jupyter notebooks with practical examples.
 
 ## Example scripts
+
 These examples demonstrate some of the Python API.
 
 Calculation of the image structure function and its azimuthal average:
 
 ```python
 import fastddm as fddm
 
-file_names = [...]  # define here your list of image file names 
+file_names = [...]  # define here your list of image file names
 images = fddm.read_images(file_names)
 
 pixel_size = 0.3    # um
 frame_rate = 50     # frames per second
-    
+
 # compute image structure function and set experimental parameters
 dqt = fddm.ddm(img_seq, range(1, len(img_seq)))
 dqt.pixel_size = pixel_size
@@ -39,13 +41,15 @@ aa = fddm.azimuthal_average(dqt, bins=dqt.shape[-1] - 1, range=(0.0, dqt.ky[-1])
 ```
 
 ## Contributing to FastDDM
+
 Contributions are welcome via [pull requests](https://github.com/somexlab/fastddm/pulls) after
 agreeing to the [Contributors' Agreement](https://github.com/somexlab/fastddm/CONTRIBUTING.rst).
 Please, refer to the [Developers'](https://fastddm.readthedocs.io/en/latest/contributing.html) section in the documentation.
 
 Please, report bugs and suggest features via the [issue tracker](https://github.com/somexlab/fastddm/issues).
 
 ## Citing FastDDM
+
 Please, cite this publication in every work that uses FastDDM:
 
     Enrico Lattuada, Fabian Krautgasser, Maxime Lavaud, Fabio Giavazzi, Roberto Cerbino
@@ -54,8 +58,10 @@ Please, cite this publication in every work that uses FastDDM:
     https://doi.org/10.1063/5.0289471
 
 ## License
+
 FastDDM is available under the [GNU GPL-3.0 license](LICENSE).
 
 ## Acknowledgements
-* The [fftw-3.3.10](https://www.fftw.org/) and [pybind11 2.12.0](https://github.com/pybind/pybind11) libraries are included in the source tree.
-* This project was funded by the Austrian Science Fund (FWF), Grant Number M 3250-N.
+
+- The [fftw-3.3.10](https://www.fftw.org/) and [pybind11 2.12.0](https://github.com/pybind/pybind11) libraries are included in the source tree.
+- This project was funded by the Austrian Science Fund (FWF), Grant Number M 3250-N.

docs/source/conda.rst

@@ -47,7 +47,7 @@ system).
           dependencies:
             - gcc
             - gxx
-            - python>=3.8
+            - python>=3.9
             - pip
 
       .. warning::
@@ -127,7 +127,7 @@ system).
           dependencies:
             - clang
             - clangxx
-            - python>=3.8
+            - python>=3.9
             - pip
 
       Create the environment by running the following command in your terminal
@@ -183,7 +183,7 @@ system).
           channels:
             - defaults
           dependencies:
-            - python>=3.8
+            - python>=3.9
             - pip
 
       For Windows, you will still need to install Visual Studio Community Edition with the

lib/fftw-3.3.10/CMakeLists.txt

@@ -1,4 +1,4 @@
-cmake_minimum_required (VERSION 3.5)
+cmake_minimum_required (VERSION 3.18)
 
 if (NOT DEFINED CMAKE_BUILD_TYPE)
   set (CMAKE_BUILD_TYPE Release CACHE STRING "Build type")