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Tumor Genome Analysis Core

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  1. BLADE BLADE Public

    BLADE: Bayesian Log-normAl DEconvolution for enhanced in silico microdissection of bulk gene expression data

    HTML 29 4

  2. ACE ACE Public

    Absolute Copy Number Estimation using low-coverage whole genome sequencing data

    R 18 8

  3. OncoBLADE OncoBLADE Public

    Hidden RNA profiles of cells in the tumor microenvironment accurately revealed by malignant cell fraction-informed deconvolution

    Jupyter Notebook 4

  4. WES-snake WES-snake Public

    snakemake from fastq to annotated mutation calling using MUTECT2

    R 3

  5. Statescope Statescope Public

    Statescope is a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

    Jupyter Notebook 2

  6. falco falco Public

    Amplicon variant caller

    R 1

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