Integrating pathways and related knowledge in a multilayer framework

Automatic context-specific network inference.

A matrix factorization model for multi-omic data and biological pathways

Analysis pipeline for single-cell RNA sequencing (scRNA-seq) data focused on T cells in COVID-19. Includes scripts and workflows for data processing, visualization, and identifying immune cell signatures and responses. Designed to accelerate reproducible research in immunology and single-cell genomics.