An algorithm for centromere assembly using long error-prone reads
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May 25, 2021 - Python
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centromere
Here are 7 public repositories matching this topic...
Fast sequence alignment for centromere with RaMA
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Feb 16, 2025 - C++
Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads
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Aug 21, 2020 - Jupyter Notebook
Accurately find CDRs and boundaries using a Hidden Markov Model
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Jan 23, 2025 - Python
Centromere calculation from TRASH-derived repeat arrays: block merging, filtering, and gap profiling.
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Dec 8, 2025 - R
Pipeline for telomere-to-telomere QC of genome assemblies: assembly stats, telomere detection, gap analysis, clustering, and visualization.
bioinformatics workflows qc transposable-elements genomics-visualization telomeres gap-analysis t2t centromere
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Dec 8, 2025 - Shell
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