Supporting information page for the "Robust and generalizable segmentation of human functional tissue units" paper
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Mar 12, 2025 - HTML
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human-reference-atlas
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HRA Exploration and Registration User Interfaces
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Nov 15, 2024 - Jupyter Notebook
HRA UIs Monorepo (includes HRA Portal, EUI, RUI, ASCT+B Reporter, and more)
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Feb 17, 2026 - TypeScript
hra-do-processor: HRA Digital Objects Processor
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Feb 3, 2026 - JavaScript
CLI to convert a simple CSV file into ASCT+B format
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Mar 6, 2023 - Python
CLI to simplify creating rui_locations.jsonld files
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Nov 13, 2025 - JavaScript
Cell Neighborhood Analysis, based on John Hickey's code
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Aug 16, 2023 - Jupyter Notebook
Supporting information page for "Human Digital Twin: Automated Cell Type Distance Computation and 3D Atlas Construction in Multiplexed Skin Biopsies" paper
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Apr 12, 2024 - Jupyter Notebook
HRA VCCF: Human Reference Atlas - Vasculature Common Coordinate Framework
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May 25, 2024 - TSQL
Supporting information page for the "Function Tissue Units in the Human Reference Atlas" paper
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Jun 18, 2025 - Jupyter Notebook
asctb-ct-label-mapper: A package to recommend controlled vocabulary for annotations of scRNA-seq datasets. and thereby enable cross-dataset or cross-experiment comparison of annotations.
python natural-language-processing data-engineering web-scraping cosine-similarity single-cell-rna-seq bert-model embeddings-similarity human-reference-atlas
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May 16, 2023 - Python
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