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bbeckley-hub / staphscope-typing-tool

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StaphScope is a comprehensive bioinformatics tool for Staphylococcus aureus genomic analysis including MLST typing, spa typing, SCCmec analysis, antimicrobial resistance detection, virulence factors, plasmid profiling, and lineage prediction from whole genome sequencing data. Designed specifically for MRSA research

pipeline surveillance bioinformatics-pipeline genotyping-by-sequencing antimicrobial-resistance staphylococcus-aureus mrsa sccmec mlst-typing spatyping
  • Updated Dec 10, 2025
  • Python

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