Repository containing the masterdata definitions of the BAM Data Store project

ETL scripts written in Jython 2.7 for openBIS dropboxes.

Upload Helper Tool and Parsers for OpenBIS in the BAM Data Store

Python package used to check the correctness of a given Masterdata definitions file with respect to the entities already registered in the BAM Data Store.

An example parser for openBIS using the bam-masterdata interface.

Mapper script to convert SigmaBAM chemical inventory exports into openBIS-compatible format.

Datastore Advanced Label App

A set of utility functions to map Python schemas and parsers between 2 database platforms.

Data Collection Utility

instanceio

A template to create and work with data models in the BAM Data Store

A minimal cookiecutter template to generate repositories for BAM Masterdata definitions.

A Data Store upload helper with flexible choice of object types and their parents/children dependencies. Based on Bastian Rühles https://github.com/BAMresearch/openbis-upload-helper

Python tool to configure openBIS instances

⛔ ARCHIVED ⛔ OpenBIS API Access to the InfectX Data Repository

CLI tool to collect usage statistics from multiple OpenBIS instances.

Tool to serialise and deserialise openBIS instances

Webapp based on openBIS to display chemicals inventory