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remote-homology-detection

Here are 2 public repositories matching this topic...

elttaes / Revisiting-PLMs

Exploring Evolution-aware & free protein language models as protein function predictors

benchmark pytorch contact-prediction stability multiple-sequence-alignment protein-annotation function-prediction protein-classification alphafold protein-language-model alphafold2 fitness-prediction zero-shot-prediction msa-construction msa-transformer esm1b remote-homology-detection metal-ion-binding

Updated Sep 28, 2024
Python

DeepFoldProtein / OTalign

OTalign: Protein sequence alignment for remote homologs using Protein Language Models and Unbalanced Optimal Transport.

bioinformatics deep-learning computational-biology optimal-transport protein-alignment remote-homology-detection protein-language-models

Updated Nov 9, 2025
Python

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