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Update to python 3.13 #110

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Merged
k-burt-uch merged 1 commit into from
Jan 7, 2026
Merged

Update to python 3.13 #110

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2 changes: 1 addition & 1 deletion .github/workflows/ci.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ jobs:
name: Python Unit Test
uses: uc-cdis/.github/.github/workflows/python_unit_test.yaml@master
with:
python-version: '3.9'
python-version: '3.13'

ci:
name: Build Image and Push
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2 changes: 1 addition & 1 deletion .github/workflows/pypi.yaml
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Expand Up @@ -8,7 +8,7 @@ jobs:
name: PyPI Poetry Publish
uses: uc-cdis/.github/.github/workflows/python_package_index_publish.yaml@master
with:
PYTHON_VERSION: '3.9'
PYTHON_VERSION: '3.13'
# This will attempt push to test PyPI first and only push to prod if it works
DO_TEST_PUBLISH_FIRST: true
secrets:
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14 changes: 10 additions & 4 deletions Dockerfile
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@@ -1,8 +1,7 @@
ARG AZLINUX_BASE_VERSION=master
ARG AZLINUX_BASE_VERSION=3.13-buildbase

# Base stage with python-build-base
FROM quay.io/cdis/python-nginx-al:${AZLINUX_BASE_VERSION} AS base

FROM quay.io/cdis/amazonlinux-base:${AZLINUX_BASE_VERSION} AS base
ENV appname=dictionaryutils

COPY --chown=gen3:gen3 . /${appname}
Expand All @@ -12,10 +11,17 @@ WORKDIR /${appname}
# Builder stage
FROM base AS builder

USER root
RUN chown -R gen3:gen3 /venv
RUN dnf install -y python3-devel postgresql-devel gcc

USER gen3
RUN python3.13 -m pip install --upgrade pip && \
python3.13 -m pip install pipx && \
python3.13 -m pipx ensurepath

RUN pipx install 'poetry>=2.0'
ENV PATH="/home/gen3/.local/bin:/usr/sbin:${PATH}"
COPY poetry.lock pyproject.toml /${appname}/

RUN poetry install -vv --no-interaction --without dev
Expand All @@ -29,7 +35,7 @@ RUN poetry install -vv --no-interaction
ENV PATH="$(poetry env info --path)/bin:$PATH"

# Final stage
FROM base
FROM builder

COPY --from=builder /${appname} /${appname}

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91 changes: 7 additions & 84 deletions poetry.lock
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8 changes: 4 additions & 4 deletions pyproject.toml
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@@ -1,6 +1,6 @@
[tool.poetry]
name = "dictionaryutils"
version = "3.5.1"
version = "4.0.0"
description = "Python wrapper and metaschema for datadictionary."
authors = ["CTDS UChicago <cdis@uchicago.edu>"]
license = "Apache-2.0"
Expand All @@ -11,18 +11,18 @@ include = [
]

[tool.poetry.dependencies]
python = ">=3.9, <4"
python = ">=3.13,<4"
PyYAML = "*"
# limiting to a version where RefResolver is deprecated but still functioning
jsonschema = "<=4.23.0"
cdislogging = "*"
requests = "*"
gen3dictionary = "^2.0.4"
gen3dictionary = ">=3.0.0"

[tool.poetry.group.dev.dependencies]
pytest = "*"
data-simulator = {git = "https://github.com/uc-cdis/data-simulator.git"}

[build-system]
requires = ["poetry>=0.12"]
requires = ["poetry>=2.1.0"]
build-backend = "poetry.masonry.api"