cvarda

Varda2 Variant frequency database C library with Python module

Python

Prerequisites for macOS (Mark):

• export CFLAGS=-isysroot/Library/Developer/CommandLineTools/SDKs/MacOSX10.14.sdk

Installation:

• python3 -m venv venv
• source venv/bin/activate
• pip install --upgrade -v .

Testing

• pip install -r requirements-dev.txt
• pytest -sv

C

make

or for a release build:

make release (maybe clean the build first?)

Tests

make check

when valgrind is installed:

make check MEMCHECK=TRUE

Documentation

Prerequisites:

• doxygen
• an active virtualenv with:
  • breathe: pip install breathe
  • sphinx_rtd_theme: pip install sphinx_rtd_theme
  • cvarda: pip install --upgrade .

make docs