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invalid SNV confidence score

Status: Open.

#144 In vibansal/HapCUT2;

· Socrates1100 opened on Nov 21, 2025

Guidance on the use of error-corrected R10 ONT reads

Status: Open.

#143 In vibansal/HapCUT2;

· MoritzBlumer opened on Oct 2, 2025

--nf 1 clarification and the snakemake pipeline

Status: Open.

#142 In vibansal/HapCUT2;

· conchoecia opened on Aug 18, 2025

Incorrect phasing of variants in cis and trans orientation

Status: Open.

#140 In vibansal/HapCUT2;

· danchurova opened on Feb 21, 2025

Cram support

Status: Open.

#139 In vibansal/HapCUT2;

· JosephLalli opened on Feb 4, 2025

Indels phasing issue

Status: Open.

#138 In vibansal/HapCUT2;

· KonstantinTyurin opened on Nov 14, 2024

Release name for 1.3.3 tag wrong

Status: Open.

#136 In vibansal/HapCUT2;

· Flamefire opened on Apr 17, 2024

Core dumped

Status: Open.

#135 In vibansal/HapCUT2;

· seynard opened on Jan 29, 2024

VCF with deletions

Status: Open.

#134 In vibansal/HapCUT2;

· dmjask opened on Nov 16, 2023

HapCUT2 does not phase this variant directly adjacent to another and overlapping another other.

Status: Open.

#132 In vibansal/HapCUT2;

· jan-glx opened on Oct 26, 2023

Convert block file to vcf after pruning

Status: Open.

#131 In vibansal/HapCUT2;

· pdimens opened on Jul 25, 2023

Skip non-diploid or other invalid variants instead of raising error

Status: Open.

#128 In vibansal/HapCUT2;

· pontushojer opened on Jan 13, 2023