v1.3.0

What's Changed

• This PR fixes missing JSON histogram data and makes the histogram outputs consistently respect --scaled, while keeping the rest of the CLI unchanged. by @aganezov in #78

New Contributors

• @aganezov made their first contribution in #78

Full Changelog: v1.2.0...v1.3.0

v1.2.0

What's Changed

Implementation of --hist-count, outputting the counts and bins of the histogram rather than the histogram itself (#69)

Full Changelog: v1.1.0...v1.2.0

v1.1.0

What's Changed

• Option to create read-length scaled histograms by @SwiftSeal in #45

New Contributors

• @SwiftSeal made their first contribution in #45

Full Changelog: v1.0.0...v1.1.0

v1.0.0

Big refactor

What's Changed

• Json + tsv output by @wdecoster in #40

Full Changelog: v0.17.0...v1.0.0

bugfix!

This fixes a bug introduced in v0.16.0, which makes a mistake in calculating the mean identity and mean read length. Thanks to Stuart for letting me know.

Full Changelog: v0.16.0...v0.17.0

v0.16.0

What's Changed

• add number of reads in addition to number of alignments by @wdecoster in #35

Full Changelog: v0.15.0...v0.16.0

v0.15.0

What's Changed

• Always filter out secondary alignments, always remove soft clipped bases by @fellen31 in #30

New Contributors

• @fellen31 made their first contribution in #30

Full Changelog: v0.14.5...v0.15.0

Fix for NM (AUX)

This fix support AUX I8, as reported (once more) in #24

fix for PS (AUX::i16)

This release fixes the new problem reported in #24

Now the Aux::I16 and I8 are also supported for the PS tag.

fix for PS (AUX::i32)

This fix addresses the issue reported in #24