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Welcome to @MicrocosmFoods!

We are on a mission to make the benefits of fermentation accessible to all while producing public goods. You can learn about what we are doing by:

  • Explore and build upon our repositories of open-source tools
  • Subscribe to our newsletter to follow along with research updates and other fun fermented foods blogs
  • Browse and reuse our open datasets on fermented foods such as curated microbial genomes from fermented foods, predicted molecules from thousands of genomes, and bioactivity predictions of fermented foods peptides
  • Questions? Have ideas for collaborations? Contact us through our website!

Popular repositories Loading

  1. fermentedfood_mags_curation fermentedfood_mags_curation Public

    Curated publicly available genomic data of fermented foods + microbes

    Python 1

  2. fermented-food-peptidomics-mining-results fermented-food-peptidomics-mining-results Public

    Repository for analyzing results from publicly available fermented foods 'omics datasets

    HTML 1

  3. bac-mining bac-mining Public

    A Nextflow workflow for bacterial genome annotation with an emphasis on bioactive molecules

    Python

  4. peptide-bioactivity-prediction peptide-bioactivity-prediction Public

    A Nextflow workflow to predict bioactivity and physiochemical characteristics of input peptide sequences

    Python

  5. metagenome-containment-profiler metagenome-containment-profiler Public

    Workflow for profiling containment of reference genomes in metagenomic samples using sylph

    R

  6. fermentedfood_metadata_curation fermentedfood_metadata_curation Public

    Curated metadata for microbial genomes from fermented foods

    Jupyter Notebook

Repositories

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