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59 followers · 31 following

Achievements

Achievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: StarstruckAchievement: YOLOAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull Sharkx3Achievement: Pair Extraordinairex3Achievement: QuickdrawAchievement: StarstruckAchievement: YOLOAchievement: Arctic Code Vault Contributor

Organizations

@MicrocosmFoods

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elizabethmcd/README.md

Hello! I'm Elizabeth.

I'm a scientist passionate about bioinformatics, reproducibility, and open science. I love working with data and the thrill of unlocking new biological insights. I especially love developing high-throughput workflows for handling large amounts of data and that just effortlessly work.

I pride myself on creating user-friendly, reproducible, and open source tools. I've highlighted a couple repositories of tools and workflows I've created throughout my career for not only making my work more reproducible and enjoyable, but other researchers' as well.

Feel free to open an issue in any of my repositories, or send me an email!

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  1. metabolisHMM metabolisHMM Public

    Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs

    Python 17 5

  2. elizabethmcd.github.io elizabethmcd.github.io Public

    Personal website built with Quarto

    HTML 5 3

  3. Arcadia-Science/metagenomics Arcadia-Science/metagenomics Public

    A Nextflow workflow for QC, evaluation, and profiling of metagenomic samples using short- and long-read technologies

    Nextflow 37 5

  4. Arcadia-Science/arcadiathemeR Arcadia-Science/arcadiathemeR Public

    Package for creating ggplot style plots in R that adhere to Arcadia Science style guidelines

    R 1

  5. MicrocosmFoods/bac-mining MicrocosmFoods/bac-mining Public

    A Nextflow workflow for bacterial genome annotation with an emphasis on bioactive molecules

    Python

  6. MicrocosmFoods/peptide-bioactivity-prediction MicrocosmFoods/peptide-bioactivity-prediction Public

    A Nextflow workflow to predict bioactivity and physiochemical characteristics of input peptide sequences

    Python