DEVOPS-690: poetry2 migration

.codespellignore

@@ -1,2 +1,3 @@
 ba
 nd
+astroid

.github/workflows/python_analysis.yml

@@ -24,14 +24,14 @@ concurrency:
 jobs:
   call-workflow-static-analysis:
     name: Static analysis
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@main
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-static_analysis.yml@DEVOPS-690-poetry2
     with:
       package-manager: 'conda'
       app-name: 'surface_apps'
       python-version: '3.10'
   call-workflow-pytest:
     name: Pytest
-    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@main
+    uses: MiraGeoscience/CI-tools/.github/workflows/reusable-python-pytest.yml@DEVOPS-690-poetry2
     with:
       package-manager: 'conda'
       python-versions: '["3.10", "3.11", "3.12"]'

.pre-commit-config.yaml

@@ -11,6 +11,11 @@ ci:
     autoupdate_schedule: monthly
 
 repos:
+-   repo: https://github.com/python-poetry/poetry
+    rev: 2.1.3
+    hooks:
+    -   id: poetry-check
+        args: [--lock]
 -   repo: https://github.com/hadialqattan/pycln
     rev: v2.5.0
     hooks:

environments/py-3.10-linux-64-dev.conda.lock.yml

@@ -1,6 +1,6 @@
 # Generated by conda-lock.
 # platform: linux-64
-# input_hash: dcbb0c7f313b8369213b9d9d9720fc719401d2f96b70477ea4114a9b7b429298
+# input_hash: a7d70d1725c59f3981a29a3c46b33e79161ba0253537f2e01304b05c029f80bd
 
 channels:
   - conda-forge
@@ -11,41 +11,42 @@ dependencies:
   - alabaster=1.0.0=pyhd8ed1ab_1
   - annotated-types=0.7.0=pyhd8ed1ab_1
   - aom=3.9.1=hac33072_0
-  - astroid=3.3.9=py310hff52083_0
+  - astroid=3.3.11=py310hff52083_0
   - babel=2.17.0=pyhd8ed1ab_0
   - blosc=1.21.6=he440d0b_1
-  - brotli=1.1.0=hb9d3cd8_2
-  - brotli-bin=1.1.0=hb9d3cd8_2
-  - brotli-python=1.1.0=py310hf71b8c6_2
+  - brotli=1.1.0=hb9d3cd8_3
+  - brotli-bin=1.1.0=hb9d3cd8_3
+  - brotli-python=1.1.0=py310hf71b8c6_3
   - brunsli=0.1=h9c3ff4c_0
   - bzip2=1.0.8=h4bc722e_7
   - c-ares=1.34.5=hb9d3cd8_0
-  - c-blosc2=2.15.2=h3122c55_1
-  - ca-certificates=2025.4.26=hbd8a1cb_0
+  - c-blosc2=2.19.0=h3122c55_0
+  - ca-certificates=2025.7.14=hbd8a1cb_0
   - cached-property=1.5.2=hd8ed1ab_1
   - cached_property=1.5.2=pyha770c72_1
-  - certifi=2025.4.26=pyhd8ed1ab_0
+  - certifi=2025.7.14=pyhd8ed1ab_0
   - cffi=1.17.1=py310h8deb56e_0
   - charls=2.4.2=h59595ed_0
   - charset-normalizer=3.4.2=pyhd8ed1ab_0
   - colorama=0.4.6=pyhd8ed1ab_1
-  - coverage=7.8.0=py310h89163eb_0
+  - coverage=7.9.2=py310h89163eb_0
   - dav1d=1.2.1=hd590300_0
   - dill=0.4.0=pyhd8ed1ab_0
   - docutils=0.21.2=pyhd8ed1ab_1
-  - exceptiongroup=1.2.2=pyhd8ed1ab_1
+  - exceptiongroup=1.3.0=pyhd8ed1ab_0
   - freetype=2.13.3=ha770c72_1
   - giflib=5.2.2=hd590300_0
   - h2=4.2.0=pyhd8ed1ab_0
-  - h5py=3.13.0=nompi_py310h2a0e991_101
-  - hdf5=1.14.6=nompi_h2d575fe_101
+  - h5py=3.14.0=nompi_py310hea1e86d_100
+  - hdf5=1.14.6=nompi_h6e4c0c1_102
   - hpack=4.1.0=pyhd8ed1ab_0
   - hyperframe=6.1.0=pyhd8ed1ab_0
+  - icu=75.1=he02047a_0
   - idna=3.10=pyhd8ed1ab_1
-  - imagecodecs=2024.12.30=py310h78a9a29_0
+  - imagecodecs=2025.3.30=py310h4eb8eaf_2
   - imageio=2.37.0=pyhfb79c49_0
   - imagesize=1.4.1=pyhd8ed1ab_0
-  - importlib-metadata=8.6.1=pyha770c72_0
+  - importlib-metadata=8.7.0=pyhe01879c_1
   - iniconfig=2.0.0=pyhd8ed1ab_1
   - isort=6.0.1=pyhd8ed1ab_1
   - jinja2=3.1.6=pyhd8ed1ab_0
@@ -55,44 +56,44 @@ dependencies:
   - lazy-loader=0.4=pyhd8ed1ab_2
   - lazy_loader=0.4=pyhd8ed1ab_2
   - lcms2=2.17=h717163a_0
-  - ld_impl_linux-64=2.43=h712a8e2_4
+  - ld_impl_linux-64=2.44=h1423503_1
   - lerc=4.0.0=h0aef613_1
-  - libaec=1.1.3=h59595ed_0
-  - libavif16=1.2.1=hbb36593_2
-  - libblas=3.9.0=31_h59b9bed_openblas
-  - libbrotlicommon=1.1.0=hb9d3cd8_2
-  - libbrotlidec=1.1.0=hb9d3cd8_2
-  - libbrotlienc=1.1.0=hb9d3cd8_2
-  - libcblas=3.9.0=31_he106b2a_openblas
-  - libcurl=8.13.0=h332b0f4_0
-  - libdeflate=1.23=h86f0d12_0
+  - libaec=1.1.4=h3f801dc_0
+  - libavif16=1.3.0=h766b0b6_0
+  - libblas=3.9.0=32_h59b9bed_openblas
+  - libbrotlicommon=1.1.0=hb9d3cd8_3
+  - libbrotlidec=1.1.0=hb9d3cd8_3
+  - libbrotlienc=1.1.0=hb9d3cd8_3
+  - libcblas=3.9.0=32_he106b2a_openblas
+  - libcurl=8.14.1=h332b0f4_0
+  - libdeflate=1.24=h86f0d12_0
   - libedit=3.1.20250104=pl5321h7949ede_0
   - libev=4.33=hd590300_2
   - libexpat=2.7.0=h5888daf_0
   - libffi=3.4.6=h2dba641_1
   - libfreetype=2.13.3=ha770c72_1
   - libfreetype6=2.13.3=h48d6fc4_1
-  - libgcc=15.1.0=h767d61c_2
-  - libgcc-ng=15.1.0=h69a702a_2
-  - libgfortran=15.1.0=h69a702a_2
-  - libgfortran5=15.1.0=hcea5267_2
-  - libgomp=15.1.0=h767d61c_2
+  - libgcc=15.1.0=h767d61c_3
+  - libgcc-ng=15.1.0=h69a702a_3
+  - libgfortran=15.1.0=h69a702a_3
+  - libgfortran5=15.1.0=hcea5267_3
+  - libgomp=15.1.0=h767d61c_3
   - libhwy=1.2.0=hf40a0c7_0
   - libjpeg-turbo=3.1.0=hb9d3cd8_0
-  - libjxl=0.11.1=h7b0646d_1
-  - liblapack=3.9.0=31_h7ac8fdf_openblas
-  - liblzma=5.8.1=hb9d3cd8_1
+  - libjxl=0.11.1=h7b0646d_2
+  - liblapack=3.9.0=32_h7ac8fdf_openblas
+  - liblzma=5.8.1=hb9d3cd8_2
   - libnghttp2=1.64.0=h161d5f1_0
-  - libnsl=2.0.1=hd590300_0
-  - libopenblas=0.3.29=pthreads_h94d23a6_0
-  - libpng=1.6.47=h943b412_0
-  - libsqlite=3.49.2=hee588c1_0
+  - libnsl=2.0.1=hb9d3cd8_1
+  - libopenblas=0.3.30=pthreads_h94d23a6_0
+  - libpng=1.6.50=h943b412_0
+  - libsqlite=3.50.2=hee844dc_2
   - libssh2=1.11.1=hcf80075_0
-  - libstdcxx=15.1.0=h8f9b012_2
-  - libstdcxx-ng=15.1.0=h4852527_2
-  - libtiff=4.7.0=hd9ff511_4
+  - libstdcxx=15.1.0=h8f9b012_3
+  - libstdcxx-ng=15.1.0=h4852527_3
+  - libtiff=4.7.0=hf01ce69_5
   - libuuid=2.38.1=h0b41bf4_0
-  - libwebp-base=1.5.0=h851e524_0
+  - libwebp-base=1.6.0=hd42ef1d_0
   - libxcb=1.17.0=h8a09558_0
   - libxcrypt=4.4.36=hd590300_1
   - libzlib=1.3.1=hb9d3cd8_2
@@ -104,34 +105,34 @@ dependencies:
   - networkx=3.4.2=pyh267e887_2
   - numpy=1.26.4=py310hb13e2d6_0
   - openjpeg=2.5.3=h5fbd93e_0
-  - openssl=3.5.0=h7b32b05_1
+  - openssl=3.5.1=h7b32b05_0
   - packaging=25.0=pyh29332c3_1
   - pillow=10.3.0=py310hebfe307_1
   - pip=25.1.1=pyh8b19718_0
   - platformdirs=4.3.8=pyhe01879c_0
-  - pluggy=1.5.0=pyhd8ed1ab_1
+  - pluggy=1.6.0=pyhd8ed1ab_0
   - pthread-stubs=0.4=hb9d3cd8_1002
   - pycparser=2.22=pyh29332c3_1
-  - pydantic=2.11.4=pyh3cfb1c2_0
+  - pydantic=2.11.7=pyh3cfb1c2_0
   - pydantic-core=2.33.2=py310hbcd0ec0_0
-  - pygments=2.19.1=pyhd8ed1ab_0
+  - pygments=2.19.2=pyhd8ed1ab_0
   - pylint=3.3.7=pyhe01879c_0
   - pysocks=1.7.1=pyha55dd90_7
-  - pytest=8.3.5=pyhd8ed1ab_0
-  - pytest-cov=6.1.1=pyhd8ed1ab_0
-  - python=3.10.17=hd6af730_0_cpython
+  - pytest=8.4.1=pyhd8ed1ab_0
+  - pytest-cov=6.2.1=pyhd8ed1ab_0
+  - python=3.10.18=hd6af730_0_cpython
   - python_abi=3.10=7_cp310
   - pytz=2025.2=pyhd8ed1ab_0
   - pywavelets=1.8.0=py310hf462985_0
   - pyyaml=6.0.2=py310h89163eb_2
-  - rav1e=0.6.6=he8a937b_2
+  - rav1e=0.7.1=h8fae777_3
   - readline=8.2=h8c095d6_2
-  - requests=2.32.3=pyhd8ed1ab_1
+  - requests=2.32.4=pyhd8ed1ab_0
   - scikit-image=0.24.0=py310h5eaa309_3
   - scipy=1.14.1=py310hfcf56fc_2
-  - setuptools=80.1.0=pyhff2d567_0
+  - setuptools=80.9.0=pyhff2d567_0
   - snappy=1.2.1=h8bd8927_1
-  - snowballstemmer=2.2.0=pyhd8ed1ab_0
+  - snowballstemmer=3.0.1=pyhd8ed1ab_0
   - sphinx=8.1.3=pyhd8ed1ab_1
   - sphinx-autodoc-typehints=3.0.1=pyhd8ed1ab_0
   - sphinx-rtd-theme=3.0.1=hd8ed1ab_0
@@ -144,29 +145,29 @@ dependencies:
   - sphinxcontrib-qthelp=2.0.0=pyhd8ed1ab_1
   - sphinxcontrib-serializinghtml=1.1.10=pyhd8ed1ab_1
   - svt-av1=3.0.2=h5888daf_0
-  - tifffile=2025.3.30=pyhd8ed1ab_0
-  - tk=8.6.13=noxft_h4845f30_101
+  - tifffile=2025.5.10=pyhd8ed1ab_0
+  - tk=8.6.13=noxft_hd72426e_102
   - toml=0.10.2=pyhd8ed1ab_1
   - tomli=2.2.1=pyhd8ed1ab_1
-  - tomlkit=0.13.2=pyha770c72_1
+  - tomlkit=0.13.3=pyha770c72_0
   - tqdm=4.67.1=pyhd8ed1ab_1
-  - typing-extensions=4.13.2=h0e9735f_0
-  - typing-inspection=0.4.0=pyhd8ed1ab_0
-  - typing_extensions=4.13.2=pyh29332c3_0
+  - typing-extensions=4.14.1=h4440ef1_0
+  - typing-inspection=0.4.1=pyhd8ed1ab_0
+  - typing_extensions=4.14.1=pyhe01879c_0
   - tzdata=2025b=h78e105d_0
-  - urllib3=2.4.0=pyhd8ed1ab_0
+  - urllib3=2.5.0=pyhd8ed1ab_0
   - wheel=0.45.1=pyhd8ed1ab_1
   - xorg-libxau=1.0.12=hb9d3cd8_0
   - xorg-libxdmcp=1.1.5=hb9d3cd8_0
   - yaml=0.2.5=h7f98852_2
   - zfp=1.0.1=h5888daf_2
-  - zipp=3.21.0=pyhd8ed1ab_1
+  - zipp=3.23.0=pyhd8ed1ab_0
   - zlib-ng=2.2.4=h7955e40_0
   - zstandard=0.23.0=py310ha75aee5_2
   - zstd=1.5.7=hb8e6e7a_2
   - pip:
-      - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@388f8f781c834f8f1d5c6243e636112bd2fd4dcb
-      - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@4acc52a74c4c20a6ffc7f335e431f9ef3f6392b1
+    - geoapps-utils @ git+https://github.com/MiraGeoscience/geoapps-utils.git@c64e2db54bfdacc19ef675a7d54288aaad8b78a8
+    - geoh5py @ git+https://github.com/MiraGeoscience/geoh5py.git@a29cd93edd90cc7ad20c227104c58150a69c6c34
 
 variables:
   KMP_WARNINGS: 0