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Add example automation config #7

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90eda1b
Add example automation config
adamhutchings Aug 1, 2025
fec10e6
Update name to new version
adamhutchings Aug 1, 2025
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67 changes: 67 additions & 0 deletions diabetes-v2/automation.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,67 @@
binary_metrics_fairness_table:
- cohorts:
A1C:
- '>7'
- '>8'
- None
- Norm
Comment on lines +3 to +7
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@gbowlin gbowlin Aug 1, 2025

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Suggested change
A1C:
- '>7'
- '>8'
- None
- Norm

Lets keep this limited to the "most important" groups.

Age:
- 70+
- '[0-10)'
- '[10-20)'
- '[20-50)'
- '[50-70)'
Gender:
- Female
- Male
Race:
- AfricanAmerican
- Asian
- Caucasian
- Hispanic
- Other
- Unknown
Taking Insulin:
- Down
- 'No'
- Steady
- Up
Taking Metformin:
- Down
- 'No'
- Steady
- Up
Comment on lines +24 to +33
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@gbowlin gbowlin Aug 1, 2025

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Suggested change
Taking Insulin:
- Down
- 'No'
- Steady
- Up
Taking Metformin:
- Down
- 'No'
- Steady
- Up

same removing non age-race-gender columns

options:
fairness_ratio: 0.2
metric_generator: 0.3333333333333333
metric_list:
- Accuracy
- Sensitivity
- Specificity
- PPV
per_context: false
score: Risk30DayReadmission
target: Readmitted within 30 Days
threshold: 0.2
plot_cohort_evaluation:
- cohorts:
Age:
- 70+
- '[0-10)'
- '[10-20)'
- '[20-50)'
- '[50-70)'
Race:
- AfricanAmerican
- Asian
- Caucasian
- Hispanic
- Other
- Unknown
options:
per_context: false
score_column: Risk30DayReadmission
target_column: Readmitted within 30 Days
thresholds:
- 0.2
- 0.1
3 changes: 3 additions & 0 deletions diabetes-v2/config.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -11,3 +11,6 @@ other_info:
event_path: "events.parquet"
prediction_path: "predictions.parquet"
metadata_path: "metadata.json"
automation_config: "automation.yml"
otel_export:
files: metrics.txt