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Fit ends of rolling median curve linearly

Status: Open.

#1028 In etal/cnvkit;

· etal opened on Feb 24, 2026

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segment command errors out with

bug

Status: Open.

#1004 In etal/cnvkit;

· kmavrommatis opened on Feb 19, 2026

Coverage command for FFPE tissue

enhancement

Status: Open.

#999 In etal/cnvkit;

· shashwatsahay opened on Feb 16, 2026

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Add Cancer GIAB to benchmark suite

enhancement

Status: Open.

#977 In etal/cnvkit;

· etal opened on Jan 27, 2026

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v1.0

Avoiding centromere-bridging segments

enhancement

Status: Open.

#969 In etal/cnvkit;

· ilykos opened on Aug 29, 2025

issue with automatic sex detection in cnvkit.py batch: female samples labelled as male

enhancement

question

sex

Status: Open.

#954 In etal/cnvkit;

· eesiribloom opened on Jun 8, 2025

Strelka VCF missing GT field causes error during "call" command

bug

Status: Open.

#943 In etal/cnvkit;

· brandon-hastings opened on Jan 29, 2025

Differnece between running batch and each step individually

bug

mystery

question

Status: Open.

#935 In etal/cnvkit;

· shashwatsahay opened on Dec 21, 2024

cnvkit.py batch with custom pon early exit 0

question

Status: Open.

#916 In etal/cnvkit;

· oronoc1210 opened on Sep 24, 2024

auto gender detection assignment for reference creation problem

enhancement

question

sex

Status: Open.

#915 In etal/cnvkit;

· duartemolha opened on Sep 24, 2024

targeted DNA seq

bug

Status: Open.

#908 In etal/cnvkit;

· MaryGoAround opened on Aug 28, 2024

call with filters cn, ci, sem

bug

Status: Open.

#906 In etal/cnvkit;

· gevro opened on Aug 14, 2024

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