A MATLAB GUI for live cell scanning microscopy analysis
cell detection in calcium imaging recordings
NeuronID is an automatic toolkit for processing two-photon calcium imaging data.
Registration of cells across sessions.
Two-photon calcium imaging of cross-orientation suppression across cortical depth in macaque V1. 4,785 ROIs across 28 depths (140-518um) reveal laminar shift from facilitation to suppression, paralleled by gradients in spatial frequency preference, tuning width, and orientation selectivity. Mixed-effects models and bootstrap CIs included.
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
The COMBO Window is a chronic cranial implant for mice, designed for long-term, multimodal neural recordings.
🎥🐁 Scripts for analysis and visualization of free-moving mouse trajectories
Learn two-photon microscopy with simple experiments
Analysis code for data presented in Mamiya et al. (2023) "Origins of proprioceptor feature selectivity and topographic maps in the Drosophila leg" Neuron
Accompanying repository to Nature Protocols paper: "Drug self-administration in head-fixed mice" by Elizabeth M. Doncheck et al. (2025).
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